Data Analysis

This section contains tutorials and code examples to help you get started with Proximity Network Assya (PNA) data analysis. We support downstream analysis in Python using pixelator together with Scanpy, and analysis in R using pixelatorR with Seurat.

Installation Requirements

Python

To complete the following sections, you will need to install pixelator as a library if you are working in Python. In order to achieve that, follow the instructions in our pixelator installation guide.

R

If you are working in R, you will need to install pixelatorR to complete the following sections. In order to achieve that, follow the instructions in our pixelatorR installation guide.